Microbiome Explorer

An R package that takes 16S and metagenomic data from raw tables to answers: DESeq2 or edgeR differential abundance, random-forest classification, and an interactive Shiny app, so researchers stop writing the same analysis code by hand.

R package · v0.3.0 · Shiny · testthat · CI · Docker

Microbiome analysis leaned on repetitive, error-prone custom scripts; a shared package makes the common views one function call.